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RStudio rstudio software
Rstudio Software, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rstudio+software/rstudio+software/10__1016_slash_j__bej__2025__109773-88-15-15
Average 90 stars, based on 1 article reviews
rstudio software - by Bioz Stars, 2026-09
90/100 stars

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Software:

Article Title: Specificity in clustering of gene-specific transcription factors is encoded in the genome
Article Snippet: .. Image analysis files in .csv format were exported to RStudio software for data plotting and visualization. ..

Article Title: Denitrification dominates nitrate attenuation and nitrous oxide effluxes under water table fluctuations.
Article Snippet: • Water table fluctuations impacted microbially mediated NO − 3 attenuation processes.. • Drainage during fluctuating water table resulted in noticeable pulses of N2O effluxes.. • Diversity of microbial community notably correlated with TN, TOC, NO − 3 , and PDR.

Article Title: Impacts of the combined application of digestate-based compost and biochar on the heavy metal Cd distribution and stress in the plant-soil system
Article Snippet: In this study, a pot experiment was conducted to evaluate the effects of digestate-based compost, chemical fertilizer, and their combination with biochar on heavy metal distribution, plant growth, and soil microbial communities.. The experimental results demonstrated that the combined application of digestate-based compost and biochar (OFB group) promoted heavy metal immobilization in soil and enhanced plant growth, while reducing the accumulation of heavy metals in plants.. Oxidizable and residual Cd levels in the OFB group increased by 14.90 % and 17.60 % compared to the control group.

Article Title: Human dorsal forebrain organoids show differentiation-state-specific protein secretion
Article Snippet: .. Correlation test between datasets was performed using Pearson test in RStudio software. ..

Article Title: Laser capture proteomics reveals new candidates for sperm-interacting proteins in the bovine oviduct epithelium
Article Snippet: Transmembrane localization of proteins was predicted using the TMHMM 2.0 tool ( https://services.healthtech.dtu.dk/services/TMHMM-2.0/ ) ( Krogh et al. 2001 ). .. All statistical analyses were performed using the RStudio software and the binary logarithm of quantitative values. ..

Article Title: Metabolic syndrome as a prognostic factor in advanced pancreatic cancer: a predictive model and chemotherapy evaluation
Article Snippet: .. Using the R language environment in RStudio software, the “edgeR” package was applied to perform differential expression analysis of the counts data. ..

Article Title: Human dorsal forebrain organoids show differentiation-state-specific protein secretion
Article Snippet: The data was plotted using GraphPad Prism 9. .. The statistics on the image quantifications were performed in RStudio software using custom R scripts. ..

Article Title: Human dorsal forebrain organoids show differentiation-state-specific protein secretion
Article Snippet: .. Custom codes in RStudio software were generated for Venn diagrams, heatmaps, GO analysis, scatter plots, density plots and histograms. ..

Generated:

Article Title: Impacts of the combined application of digestate-based compost and biochar on the heavy metal Cd distribution and stress in the plant-soil system
Article Snippet: In this study, a pot experiment was conducted to evaluate the effects of digestate-based compost, chemical fertilizer, and their combination with biochar on heavy metal distribution, plant growth, and soil microbial communities.. The experimental results demonstrated that the combined application of digestate-based compost and biochar (OFB group) promoted heavy metal immobilization in soil and enhanced plant growth, while reducing the accumulation of heavy metals in plants.. Oxidizable and residual Cd levels in the OFB group increased by 14.90 % and 17.60 % compared to the control group.

Article Title: Human dorsal forebrain organoids show differentiation-state-specific protein secretion
Article Snippet: .. Custom codes in RStudio software were generated for Venn diagrams, heatmaps, GO analysis, scatter plots, density plots and histograms. ..

Quantitative Proteomics:

Article Title: Metabolic syndrome as a prognostic factor in advanced pancreatic cancer: a predictive model and chemotherapy evaluation
Article Snippet: .. Using the R language environment in RStudio software, the “edgeR” package was applied to perform differential expression analysis of the counts data. ..



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Beta diversity assessment. ( A ) Three-dimensional principal component analysis. ( B ) Non-metric multidimensional scaling (NMDS) analysis.

Journal: Scientific Reports

Article Title: Development of a three-species gut microbiome diagnostic model for acute pancreatitis and its association with systemic inflammation: a prospective cross-sectional study

doi: 10.1038/s41598-025-11042-6

Figure Lengend Snippet: Beta diversity assessment. ( A ) Three-dimensional principal component analysis. ( B ) Non-metric multidimensional scaling (NMDS) analysis.

Article Snippet: And the software RStudio (Version 2023.06.1, scatterplot3d package) was used to analyze beta-diversity (among samples).

Techniques: